I recently blew up the USB i/f and the 3 Volt regulator on my 2560. I am powering it from the output of a 9 V LDO regulator connected to the Vin pin on the board. I subsequently connected my laptop to the board via the USB connection to perform some basic I/O. The board got very hot and now the USB I/F is fried. I'm also only getting 2.2V out of the 3 V regulator on board.
Is connecting the USB to the board while powered from an external supply a no no or is there a documented procedure on doing this?