I have built a custom part that has 5 thru hole pins. I have double checked this build 3 times and all dimensions match the manufacturers specs. I have placed this part twice on my board and have 19 errors from two of the pins on each part. 5 of the errors are Drill Distance errors, the rest are overlap errors on the top and bottom of the board. I have tried ripping up the traces to the pins saving exiting from the board, reentering and checking the errors, to no effect. I then replaced the traces, to no effect. The other three pins on each component have no errors even though I built this part by copying the pins 4 times. Does anyone know how to correct these errors or should I just ignore them?
Below is the offending portion of the circuit.

