I believe each PCB layout and hardware engineer have his/her own approach to tackle EMC issues. I think using good practice and spending more time in the design phase will save a lot of time later on, especially with designs invloving high frequency clocks and switching power supplies. I am currently looking into investing in an EMC siulation tool to simulate PCB behaviour, one option that seems popular is CST Studio, would appreciate any thoughts and recommendations about this topic.
Some references:
https://www.signalintegrityjournal.com/articles/480-leading-eda-tools-for-emcemi-design-challenges